Aufgaben Development, validation, maintenance and troubleshooting of clinical NGS workflows for targeted panels, WES and WGS - from variant calling and annotation to quality control and data transfer Automation and optimisation of reproducible bioinformatics workflows using scripts, workflow management systems and containerised environments Development and maintenance of databases, quality metrics and monitoring tools for sequencing performance, workflows and metadata Further development of applications and user interfaces that facilitate access to sequencing data, quality metrics and variant annotations Integration and optimisation of laboratory workflows in sLIMS and ensuring data exchange between laboratory systems, instruments and bioinformatics pipelines in close interdisciplinary collaboration
With the Inselspital, Bern University Hospital, the hospitals Riggisberg, Aarberg, Belp and the Bern Rehabilitation Center Heiligenschwendi, the Insel Gruppe forms the largest full-service medical care system in Switzerland, from cutting-edge medicine to primary care. More than 11,000 employees from 102 nations ensure that our patients are treated according to the latest developments, methods and possibilities in medicine.
